Birgid Schlindwein's

Hypermedia Glossary Of Genetic Terms

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Sequence tagged microsatellite (STMS) Primers constructed from the flanking regions of microsatellite DNA which can be used in PCR reactions to amplify the repeat region.
Related Terms:
Primer Short preexisting single-stranded polynucleotide chain to which new deoxyribonucleotides can be added by DNA polymerase. It anneals to a nucleic acid template and promotes copying of the template starting from the primer site.
Flanking region The DNA sequence extending on either side of a specific gene or locus
Microsatellite Highly polymorphic DNA marker comprised of mononucleotides, dinucleotides, trinucleotides or tetra-nucleotides that are repeated in tandem arrays and distributed throughout the genome. The best studied are the CA (alternatively GT) dinucleotide repeats. They are used for genetic mapping. Cf. minisatellite.
Deoxyribonucleic acid (DNA) The molecule that encodes genetic information. DNA is a double-stranded molecule held together by weak bonds between base pairs of nucleotides. The four nucleotides in DNA contain the bases: adenine (A), guanine (G), cytosine (C), and thymine (T). In nature, base pairs form only between A and T and between G and C; thus the base sequence of each single strand can be deduced from that of its partner.
Polymerase chain reaction (PCR) A method, developed by Kary Banks Mullis 1983, for amplifying a DNA base sequence using a heat-stable polymerase and two 20-base primers, one complementary to the (+)-strand at one end of the sequence to be amplified and the other complementary to the (-)-strand at the other end. Because the newly synthesized DNA strands can subsequently serve as additional templates for the same primer sequences, successive rounds of primer annealing, strand elongation, and dissociation produce rapid and highly specific amplification of the desired sequence. PCR also can be used to detect the existence of the defined sequence in a DNA sample (see DNA amplification fingerprinting.

Several variations have been developed for specific needs. May be combined with reverse transcription of mRNA to cDNA to amplify an mRNA so called RT-PCR.

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Programming: Herbert Maier
Database: Birgid Schlindwein. Please contact me if you encounter any mistakes or if you are missing anything
© Dr. Birgid B. Schlindwein
last update of the database 10/01/2006